Health and Social Science
1,076 items in 12 lists
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niinote github.com
Add AFNI nifti XML history to header to run and record any command. Part of lncdtools.
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med2image github.com
Python CLI tool for generating jpg or png images from DICOM or nifti files.
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pymapVBVD git.fmrib.ox.ac.uk
Reads Siemens .dat 'twix' raw data files. Python port of Philipp Ehses' Matlab tool mapVBVD.
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fslmaths fsl.fmrib.ox.ac.uk
Simple but powerful program to allow mathematical manipulation of images. From FSL.
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fsleyes fsl.fmrib.ox.ac.uk
Volumetric viewer from FSL.
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FSL-MRS fsl.fmrib.ox.ac.uk
A suite of tools for MR Spectroscopy, including single voxel (SVS), MRS imaging (MRSI), functional MRS (fMRS), diffusion MRS (dwMRS), edited spectroscopy, etc.
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flirt, fnirt fsl.fmrib.ox.ac.uk
Warping software provided by FSL tools.
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FEAT fsl.fmrib.ox.ac.uk
GUI guided analysis of simple experiment based on general linear modeling. Part of FSL.
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bet fsl.fmrib.ox.ac.uk
FSL's brain extraction tool.
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FSL fsl.fmrib.ox.ac.uk
A comprehensive library of analysis tools for FMRI, MRI and diffusion brain imaging data.
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make frontiersin.org
follow script recipes defined in Makefile.
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fscalc freesurfer.net
Freesurfer wrapper of fslmaths.
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Freesurfer freesurfer.net
An open source neuroimaging toolkit for processing, analyzing, and visualizing human brain MR images.
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fooof fooof-tools.github.io
Fast, efficient, and physiologically-informed tool to parameterize neural power spectra.
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fmriprep fmriprep.org
Accessible preprocessing pipeline robust to variations in scan acquisition protocols with comprehensive error and output reporting. Input is BIDS dataset.
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Flywheel flywheel.io
A cloud-based imaging research data platform for data capture, curating, automation, and machine learning.
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FIRMM firmm.readthedocs.io
Real-time motion monitoring for fMRI, diffusion, and navigated T1/T2 image acquisition.
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ENIGMA enigma.ini.usc.edu
The Enhancing Neuro Imaging Genetics through Meta Analysis Consortium contains 50 working group's imaging and genomics data.
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PACS en.wikipedia.org
Picture Archiving and Communication System standard used to store and transfer DICOM images from medical equipment and likely implemented by scanner manufacture. See Siemens Healthineers Syngo Carbon, Phillips Vue PACS, GE HealthCare True PACS.
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dsistudio dsi-studio.labsolver.org
DSI viewer from the dsi-studio suit of tools.
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dsi-studio dsi-studio.labsolver.org
A tractography software tool that maps brain connections and correlates findings with neuropsychological disorders.
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antsBrainExtraction.sh dpaniukov.github.io
ANTs version.
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afni discuss discuss.afni.nimh.nih.gov
AFNI's discuss instance.
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reproIn dbic-handbook.readthedocs.io
Naming exam card sequences.
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clpipe clpipe.readthedocs.io
Uses fmriprep for preprocessing fMRI data and implements a variety of additional processing steps important for functional connectivity analyses such as nuisance regression and filtering.
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brainlife.io brainlife.io
Open-source, free and secure reproducible neuroscience analysis platform.
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BIDS bids-specification.readthedocs.io
Brain Imaging Data Structure - directory hierarchy and file naming specification.
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MNI152 bic.mni.mcgill.ca
Unbiased standard magnetic resonance imaging template brain volume for normal population.
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dicom_hinfo afni.nimh.nih.gov
, dicom_hdr - Prints selected information from the DICOM file.
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afni_proc.py afni.nimh.nih.gov
Best practice pipelines with pre-configured blocks using AFNI.
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Dimon afni.nimh.nih.gov
Monitor real-time acquisition of DICOM image files with AFNI.
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3dcalc afni.nimh.nih.gov
Voxel-by-voxel arithmetic on 1D to 4D datasets. From AFNI.
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3dSkullStrip afni.nimh.nih.gov
AFNI's skull stripping utility with many parameters.
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3dQwarp afni.nimh.nih.gov
OpenMP parallelized AFNI tool to compute a nonlinearly warped version of source dataset to match a base dataset.
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3dNotes afni.nimh.nih.gov
A program to add, delete and show notes for AFNI datasets.
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3dDeconvolve afni.nimh.nih.gov
AFNI - Program to calculate the deconvolution of a measurement 3D+time dataset with a specified input stimulus time series. This program can also perform multiple linear regression using multiple input stimulus time series.
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AFNI afni.nimh.nih.gov
Volumetric viewer from the AFNI suit. GUI's aesthetic defined by the '90s era Motif toolkit.
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AFNI afni.nimh.nih.gov
Analysis of Functional NeuroImages is a leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of multiple MRI modalities.
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ABCD abcdstudy.org
Long-term Adolescent Brain Cognitive Development study including 1000s of longitudinal MRI scans.
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TransVoiceLessons youtube.com
YouTube channel offering voice training for trans individuals.
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Standards of Care for the Health of Transgender and Gender Diverse People wpath.org
, Version 8 (2022) [PDF] - Global standards for transgender healthcare.
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The World Professional Association for Transgender Health (WPATH) wpath.org
Sets global standards for transgender health.
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Wiki Trans wikitrans.co
(French) - Wiki-style resource on transgender topics in French.
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Gender Dysforie VUMC vumc.nl
(Dutch) - Dutch medical center for gender dysphoria.
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Voice Tools by Azalea voice.hydev.org
Voice training tool and exercises.
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Transgender University Guidance uniguide.transacademic.org
Guidance on navigating university as a transgender student.
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Underworks underworks.com
Binders for safe chest compression.
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Gender Dysforie UMCG umcg.nl
(Dutch) - Another gender dysphoria treatment center in the Netherlands.
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Transvisie transvisie.nl
Dutch organization supporting transgender health.
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Trans Media Watch - Timeline transmediawatch.org
A timeline detailing significant media events related to transgender issues.
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