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Health and Social Science

1,076 items in 12 lists

all kinds
  1. OCRmyPDF github.com
    tool category #robotic-tooling link ↗

    Adds an OCR text layer to scanned PDF files, allowing them to be searched.

  2. BioGPT github.com
    tool category #bioie link ↗

    paper - A GPT-2 model pre-trained on 15 million PubMed abstracts, along with fine-tuned versions for several biomedical tasks.

  3. nilearn github.com
    tool category #machine-learning link ↗
  4. DeepLabCut github.com
    tool category #neuroscience link ↗
  5. MNE-Python github.com
    tool category #neuroscience link ↗
  6. mimic-code github.com
    tool category #bioie link ↗

    Code associated with the MIMIC-III dataset (see below). Includes some helpful tutorials.

  7. Neuromatch Academy github.com
    tool category #neuroscience link ↗
  8. CaImAn github.com
    tool category #neuroscience link ↗

    Computational toolbox for large scale Calcium Imaging Analysis.

  9. PsychoPy github.com
    tool category #neuroscience link ↗
  10. Suite2p github.com
    tool category #neuroscience link ↗

    Pipeline for processing two-photon calcium imaging data.

  11. ScispaCy github.com
    tool category #bioie link ↗

    paper - A version of the spaCy framework for scientific and biomedical documents.

  12. JabRef jabref.org
    site category #digital-humanities link ↗

    Open source bibliography reference manager.

  13. Zotero zotero.org
    site category #mac link ↗

    Free tool to collect, organize, annotate, cite, and share research.

  14. SciBERT github.com
    tool category #bioie link ↗

    paper - A BERT model trained on >1M papers from the Semantic Scholar database.

  15. Bertin.js github.com
    tool category #frontend-gis link ↗

    A JavaScript library for visualizing geospatial data and making thematic maps for the web.

  16. Brian2 github.com
    tool category #neuroscience link ↗
  17. dcm2niix github.com
    tool category #neuroimaging link ↗

    DICOM to NIfTI converter.

  18. OMOP Common Data Model github.com
    tool category #bioie link ↗

    a standard for observational healthcare data.

  19. FieldTrip github.com
    tool category #neuroscience link ↗
  20. Nengo github.com
    tool category #neuroscience link ↗
  21. SpikeInterface github.com
    tool category #neuroscience link ↗
  22. DIPY github.com
    tool category #neuroscience link ↗
  23. Nipype github.com
    tool category #neuroscience link ↗
  24. NiBabel github.com
    tool category #neuroscience link ↗
  25. Alsentzer et al Clinical BERT github.com
    tool category #bioie link ↗

    paper

  26. fMRIPrep github.com
    tool category #neuroscience link ↗
  27. BioBERT github.com
    tool category #bioie link ↗

    paper - code - A PubMed and PubMed Central-trained version of the BERT language model.

  28. datalad github.com
    tool category #neuroimaging link ↗

    Keep code, data, containers under control with git and git-annex. Esp datalad run --input=... --output=....

  29. 1 Million Women To Tech github.com
    tool category #diversity link ↗

    Organization whose mission is to offer free coding education to 1 million women by 2020. Has free (DIY) and paid (certification) courses.

  30. BlueBERT github.com
    tool category #bioie link ↗

    paper - A BERT model pre-trained on PubMed text and MIMIC-III notes.

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