Health and Social Science
1,076 items in 12 lists
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OCRmyPDF github.com
Adds an OCR text layer to scanned PDF files, allowing them to be searched.
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BioGPT github.com
paper - A GPT-2 model pre-trained on 15 million PubMed abstracts, along with fine-tuned versions for several biomedical tasks.
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nilearn github.com
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DeepLabCut github.com
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MNE-Python github.com
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mimic-code github.com
Code associated with the MIMIC-III dataset (see below). Includes some helpful tutorials.
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Neuromatch Academy github.com
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CaImAn github.com
Computational toolbox for large scale Calcium Imaging Analysis.
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PsychoPy github.com
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Suite2p github.com
Pipeline for processing two-photon calcium imaging data.
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ScispaCy github.com
paper - A version of the spaCy framework for scientific and biomedical documents.
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SciBERT github.com
paper - A BERT model trained on >1M papers from the Semantic Scholar database.
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Bertin.js github.com
A JavaScript library for visualizing geospatial data and making thematic maps for the web.
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Brian2 github.com
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dcm2niix github.com
DICOM to NIfTI converter.
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OMOP Common Data Model github.com
a standard for observational healthcare data.
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FieldTrip github.com
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Nengo github.com
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SpikeInterface github.com
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DIPY github.com
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Nipype github.com
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NiBabel github.com
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Alsentzer et al Clinical BERT github.com
paper
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fMRIPrep github.com
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BioBERT github.com
paper - code - A PubMed and PubMed Central-trained version of the BERT language model.
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datalad github.com
Keep code, data, containers under control with git and git-annex. Esp datalad run --input=... --output=....
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1 Million Women To Tech github.com
Organization whose mission is to offer free coding education to 1 million women by 2020. Has free (DIY) and paid (certification) courses.
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BlueBERT github.com
paper - A BERT model pre-trained on PubMed text and MIMIC-III notes.
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Monty github.com
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NEURON github.com
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