Neuroimaging
91 items from npacore/awesome-neuroimaging ★51
-
-
datalad github.com
Keep code, data, containers under control with git and git-annex. Esp datalad run --input=... --output=....
-
heudiconv github.com
A flexible DICOM converter for organizing brain imaging data into structured directory layouts.
-
-
Osprey github.com
An all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
-
-
imtool3D_td github.com
3D Image Viewer with ROI tools for Matlab (NIFTI viewer, Manual segmentation).
-
Online Neuroimaging Resources github.com
A laundry list of online resources for MRI, fMRI, EEG, MEG.
-
-
-
mrQA github.com
Tools for quality assurance in medical imaging datasets, including protocol compliance.
-
UK Biobank ukbiobank.ac.uk
A large-scale biomedical database and research resource with 500,000 research participants.
-
-
OpenNeuro openneuro.org
A free and open platform for validating and sharing BIDS-compliant MRI, PET, MEG, EEG, and iEEG data.
-
SPM fil.ion.ucl.ac.uk
Statistical Parametric Mapping refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data.
-
Andy's Brain Blog andysbrainblog.com
Tutorials and videos about neuroimaging analysis from start to finish in all the major software packages (AFNI, SPM, and FSL).
-
-
oro.nifti github.com
Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.
-
XNAT xnat.org
An extensible open-source imaging informatics software platform dedicated to imaging-based research.
-
XCP-D xcp-d.readthedocs.io
Post-processing and noise regression pipeline picks up right where fMRIprep ends.
-
templateflow templateflow.org
A modular, version-controlled resource that allows researchers to use templates "off-the-shelf" and share new ones.
-
-
freeview surfer.nmr.mgh.harvard.edu
Surface and volumetric image viewer in Freesurfer suit. Uses the QT toolkit.
-
ANTs stnava.github.io
Advanced Normalization Tools includes probabilistic tissue segmentation and machine learning methods based on expert labeled data to order to maximize reliability and consistency of multiple modality image segmentation.
-
-
Qu|Nex qunex.yale.edu
The Quantitative Neuroimaging Environment & Toolbox (QuNex) is an open-source software suite that collectively supports an extensible framework for data organization, preprocessing, quality assurance, and analyses across neuroimaging modalities.
-
qsiprep qsiprep.readthedocs.io
Configures pipelines for processing diffusion-weighted MRI (dMRI) data.
-
-
pydicom pydicom.github.io
Python package and cli tool for inspecting, modifying, and creating DICOM files.
-
- next page of items loading…
