fmriprep

fmriprep.orgsite

Accessible preprocessing pipeline robust to variations in scan acquisition protocols with comprehensive error and output reporting. Input is BIDS dataset.

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Neuroimaging

added

2026-10-10

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1. ▲
   fMRIPrep github.com

   tool category #neuroscience link ↗
2. ▲
   fmri_processing_scripts github.com

   tool category #neuroimaging link ↗

   Legacy pipeline for maximal preprocessing.

   
3. ▲
   qsiprep qsiprep.readthedocs.io

   site category #neuroimaging link ↗

   Configures pipelines for processing diffusion-weighted MRI (dMRI) data.

4. ▲
   clpipe clpipe.readthedocs.io

   site category #neuroimaging link ↗

   Uses fmriprep for preprocessing fMRI data and implements a variety of additional processing steps important for functional connectivity analyses such as nuisance regression and filtering.

5. ▲
   BIDS bids.neuroimaging.io

   site category #neuroscience link ↗
6. ▲
   neurostars neurostars.org

   site category #neuroimaging link ↗

   General neuroimaging discuss form. fmriprep suggested Q&A site.

   

Neuroimaging › Pipelines > BOLD: “Accessible preprocessing pipeline robust to variations in scan acquisition protocols with comprehensive error and output reporting. Input is BIDS dataset.”