Clinical information extraction applications: A literature review
A review of clinical IE papers published as of September 2016. From Mayo Clinic group (see below).
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- 2026-10-10
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Mayo Clinic's clinical natural language processing program mayo.edu
Several groups at Mayo Clinic have made major contributions to BioIE (for example, the Apache cTAKES platform) over the past 20 years.
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BioInfer corpora.informatik.hu-berlin.de
paper - 1,100 sentences from biomedical research abstracts annotated for relationships (including PPI), named entities, and syntactic dependencies. Additional information and download links are here.
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Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine ahajournals.org
An overview of how BioIE and bioinformatics workflows can be applied to questions in cardiovascular health and medicine research.
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eICU Collaborative Research Database eicu-crd.mit.edu
paper - a database of observations from more than 200 thousand intensive care unit admissions, with consistent structure. Requires registration, training course completion, and data use agreement.
Biomedical Information Extraction › Research Overviews > Pre-LLM Overviews: “A review of clinical IE papers published as of September 2016. From Mayo Clinic group (see below).”