Mayo Clinic's clinical natural language processing program
Several groups at Mayo Clinic have made major contributions to BioIE (for example, the Apache cTAKES platform) over the past 20 years.
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- 2026-10-10
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Clinical information extraction applications: A literature review sciencedirect.com
A review of clinical IE papers published as of September 2016. From Mayo Clinic group (see below).
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Boston Children's Hospital Natural Language Processing Laboratory childrenshospital.org
Led by Dr. Guergana Savova, formerly at Mayo Clinic and the Apache cTAKES project.
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n2c2 (formerly i2b2) Data portal.dbmi.hms.harvard.edu
The Department of Biomedical Informatics (DBMI) at Harvard Medical School manages data for the National NLP Clinical Challenges and the Informatics for Integrating Biology and the Bedside challenges running since 2006. They require registration before access and use. Datasets…
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Brown Center for Biomedical Informatics brown.edu
Based at Brown University and directed by Dr. Neil Sarkar, whose research group works on topics in clinical NLP and IE.
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Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine ahajournals.org
An overview of how BioIE and bioinformatics workflows can be applied to questions in cardiovascular health and medicine research.
Biomedical Information Extraction › Groups Active in the Field: “Several groups at Mayo Clinic have made major contributions to BioIE (for example, the Apache cTAKES platform) over the past 20 years.”