UMLS Knowledge Sources
reference manual - A large and comprehensive collection of biomedical terminology and identifiers, as well as accompanying tools and scripts. Depending on your purposes, the single file MRCONSO.RRF may be sufficient, as this file contains unique identifiers and names for all…
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- 2026-10-10
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UMLS Metathesaurus nlm.nih.gov
paper - Mappings between >3.8 million concepts, 14 million concept names, and >200 sources of biomedical vocabulary and identifiers. It's big. It may help to prepare a subset of the Metathesaurus with the MetamorphoSys installation tool but we're still talking about ~30 Gb of…
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Demner-Fushman group at NLM lhncbc.nlm.nih.gov
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NCBI Disease Corpus ncbi.nlm.nih.gov
paper - A corpus of 793 biomedical abstracts annotated with names of diseases and related concepts from MeSH and OMIM.
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BioRED ftp.ncbi.nlm.nih.gov
paper - a set of >6.5K biomedical relation annotations, plus labels for novel findings.
Biomedical Information Extraction › Datasets > Other Datasets: “reference manual - A large and comprehensive collection of biomedical terminology and identifiers, as well as accompanying tools and scripts. Depending on your purposes, the single file MRCONSO.RRF may be sufficient, as this file contains unique identifiers and names for all…”