Demner-Fushman group at NLM
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- Biomedical Information Extraction
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- 2026-10-10
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BioNLP group at NCBI ncbi.nlm.nih.gov
Develops improvements to biomedical literature search and curation (e.g., through PubMed), led by Dr. Zhiyong Lu.
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Center for Computational Pharmacology NLP Group compbio.ucdenver.edu
based at University of Colorado, Denver and led by Larry Hunter - see their GitHub repos here.
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NLM HyperDoc Visible Human Project nlm.nih.gov
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UMLS Knowledge Sources nlm.nih.gov
reference manual - A large and comprehensive collection of biomedical terminology and identifiers, as well as accompanying tools and scripts. Depending on your purposes, the single file MRCONSO.RRF may be sufficient, as this file contains unique identifiers and names for all…
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DNorm ncbi.nlm.nih.gov
paper - A method for disease normalization, i.e., linking mentions of disease names and acronyms to unique concept identifiers. Downloadable version includes the NCBI Disease Corpus and BC5CDR (see Annotated Text Data below).
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JensenLab text mining exercises jensenlab.org