UMLS Metathesaurus
paper - Mappings between >3.8 million concepts, 14 million concept names, and >200 sources of biomedical vocabulary and identifiers. It's big. It may help to prepare a subset of the Metathesaurus with the MetamorphoSys installation tool but we're still talking about ~30 Gb of…
- from
- Biomedical Information Extraction
- added
- 2026-10-10
- likes
- 0
similar
-
UMLS Semantic Network semanticnetwork.nlm.nih.gov
paper - Lists of 133 semantic types and 54 semantic relationships covering biomedical concepts and vocabulary. Is the Metathesaurus too complex for your needs? Try this. Does not require UTS account to download.
-
UMLS Knowledge Sources nlm.nih.gov
reference manual - A large and comprehensive collection of biomedical terminology and identifiers, as well as accompanying tools and scripts. Depending on your purposes, the single file MRCONSO.RRF may be sufficient, as this file contains unique identifiers and names for all…
-
NCBI Disease Corpus ncbi.nlm.nih.gov
paper - A corpus of 793 biomedical abstracts annotated with names of diseases and related concepts from MeSH and OMIM.
-
BioUML wiki.biouml.org
paper - An architecture for biomedical data analysis, integration, and visualization. Conceptually based on the visual modeling language UML.
-
BioInfer corpora.informatik.hu-berlin.de
paper - 1,100 sentences from biomedical research abstracts annotated for relationships (including PPI), named entities, and syntactic dependencies. Additional information and download links are here.
-
SPECIALIST Lexicon lexsrv3.nlm.nih.gov
paper - A general English lexicon that includes many biomedical terms. Updated yearly since 1994 and still updated as of 2019. Part of UMLS but does not require UTS account to download.
Biomedical Information Extraction › Ontologies and Controlled Vocabularies: “paper - Mappings between >3.8 million concepts, 14 million concept names, and >200 sources of biomedical vocabulary and identifiers. It's big. It may help to prepare a subset of the Metathesaurus with the MetamorphoSys installation tool but we're still talking about ~30 Gb of…”