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BioNLP group at NCBI

ncbi.nlm.nih.govsite

Develops improvements to biomedical literature search and curation (e.g., through PubMed), led by Dr. Zhiyong Lu.

visit ncbi.nlm.nih.gov ↗
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Biomedical Information Extraction
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2026-10-10
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  1. Demner-Fushman group at NLM lhncbc.nlm.nih.gov
    site category #bioie link ↗
  2. rentrez github.com
    tool category #bioie link ↗

    R utilities for accessing NCBI resources, including PubMed.

  3. UTHealth Houston Biomedical Natural Language Processing Lab sbmi.uth.edu
    site category #bioie link ↗

    Based in the University of Texas Health Science Center at Houston, School of Biomedical Informatics and led by Dr. Hua Xu.

  4. Center for Computational Pharmacology NLP Group compbio.ucdenver.edu
    site category #bioie link ↗

    based at University of Colorado, Denver and led by Larry Hunter - see their GitHub repos here.

  5. NCBI E-utilities ncbi.nlm.nih.gov
    site category #computational-biology link ↗

    Unified APIs for accessing NCBI databases (Gene, GEO, SRA, PubChem, etc).

  6. Human Genome Resources at NCBI ncbi.nlm.nih.gov
    site category #computational-biology link ↗

    Database for genomics, proteomics, transcriptomics, and systems biology.

Biomedical Information Extraction › Groups Active in the Field: “Develops improvements to biomedical literature search and curation (e.g., through PubMed), led by Dr. Zhiyong Lu.”