Neuroimaging
91 items from npacore/awesome-neuroimaging ★51
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dcm2niix github.com
DICOM to NIfTI converter.
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datalad github.com
Keep code, data, containers under control with git and git-annex. Esp datalad run --input=... --output=....
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heudiconv github.com
A flexible DICOM converter for organizing brain imaging data into structured directory layouts.
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HALFpipe github.com
User-friendly software that facilitates reproducible analysis of fMRI data.
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Osprey github.com
An all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
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bids-validator github.com
Validator for the Brain Imaging Data Structure.
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imtool3D_td github.com
3D Image Viewer with ROI tools for Matlab (NIFTI viewer, Manual segmentation).
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Online Neuroimaging Resources github.com
A laundry list of online resources for MRI, fMRI, EEG, MEG.
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DAX github.com
Distributed Automation for XNAT: use containerization w/YAML defined input/output.
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lcmodel github.com
Implements linear-combination modeling of magnetic resonance spectroscopy data.
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mrQA github.com
Tools for quality assurance in medical imaging datasets, including protocol compliance.
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fmri_processing_scripts github.com
Legacy pipeline for maximal preprocessing.
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oro.nifti github.com
Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.
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hurst github.com
Algorithm to assess intrinsic excitation-inhibition imbalance in MR (Trakoshis et al, eLife, 2020).
