Health and Social Science
1,076 items in 12 lists
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Huang et al ClinicalBERT github.com
paper
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medaCy github.com
A system for building predictive medical natural language processing models. Built on the spaCy framework.
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Brainbrowser github.com
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AllenSDK github.com
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Neo github.com
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Brayns github.com
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Resources For Allies github.com
By Lara Hogan.
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So, You Just Learned There Are Issues With The Tech Industry. Now What? github.com
By Stephanie Slattery.
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heudiconv github.com
A flexible DICOM converter for organizing brain imaging data into structured directory layouts.
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Nitime github.com
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Elephant github.com
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Anafora github.com
paper - An annotation tool with adjudication and progress tracking features.
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Stylo github.com
R package for stylometric analyses.
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neuroSummerSchools github.com
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PyNWB github.com
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rentrez github.com
R utilities for accessing NCBI resources, including PubMed.
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brainGraph github.com
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CORD-19 github.com
A corpus of scholarly manuscripts concerning COVID-19. Articles are primarily from PubMed Central and preprint servers, though the set also includes metadata on papers without full-text availability.
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Dreamento github.com
DReam ENgenieering TOolbox is Python-based program for dream engineering while monitoring/analyzing real-time EEG data.
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expyriment github.com
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HALFpipe github.com
User-friendly software that facilitates reproducible analysis of fMRI data.
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JS Bookmarklet Simulating Colorblindness github.com
This is a JS bookmarklet that takes any page and simulates what is like to navigate with colorblindness.
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Osprey github.com
An all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo magnetic resonance spectroscopy (MRS) data.
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SemEHR github.com
paper - an IE infrastructure for electronic health records (EHR). Built on the CogStack project.
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CRAFT github.com
paper - 67 full-text biomedical articles annotated in a variety of ways, including for concepts and coreferences. Now on version 5, including annotations linking concepts to the MONDO disease ontology.
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nat: NeuroAnatomy Toolbox github.com
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IntellyWeave github.com
Open-source platform for humanities research featuring AI-powered entity extraction (persons, organizations, locations, dates, events), semantic search across document collections, geospatial visualization for historical events, and archive research agents with 30+ curated…
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II-Commons github.com
Daily-updated skill and CLI for deterministic retrieval across arXiv, PubMed/PMC, and supported US policy corpora.
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GoodForPoc github.com
List of inclusive companies for people of color in tech.
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bids-validator github.com
Validator for the Brain Imaging Data Structure.
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imtool3D_td github.com
3D Image Viewer with ROI tools for Matlab (NIFTI viewer, Manual segmentation).
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Pubrunner github.com
A framework for running text mining tools on the newest set(s) of documents from PubMed.
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TabInOut github.com
paper - a framework for IE from tables in the literature.
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Online Neuroimaging Resources github.com
A laundry list of online resources for MRI, fMRI, EEG, MEG.
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PyNoetic github.com
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DeepPhe github.com
A system for processing documents describing cancer presentations. Based on cTAKES (see above).
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DAX github.com
Distributed Automation for XNAT: use containerization w/YAML defined input/output.
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SORTED github.com
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lucidsourcekit github.com
An all-you-need toolkit for lucid dreaming including a binaural beats player and much more.
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Lightened Dream github.com
A dream journal designed for lucid dreamers.
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Dream Journal App github.com
A Dream Journal that uses Google Drive.
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lcmodel github.com
Implements linear-combination modeling of magnetic resonance spectroscopy data.
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mrQA github.com
Tools for quality assurance in medical imaging datasets, including protocol compliance.
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Bio-SCoRes github.com
paper - A framework for biomedical coreference resolution.
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JupyterHub Workspace github.com
The JupyterHub Workspace aims to be a collaborative programming and code-sharing platform. It provides access to browser-based Jupyter Notebooks, which integrate code with explanatory text, and are already used as a new publishing form. Data can be shared using the Nextcloud…
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renoir github.com
Python package for teaching computational color theory through art history. Extracts and analyzes artist-specific works from WikiArt with color palette extraction, harmony detection, and 17 progressive Jupyter notebooks for digital humanities education.
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unmiri-ngs-fhir-schema github.com
Apache-2.0 JSON Schema (Draft 2020-12) API contract for cross-vendor somatic NGS interpretation output (Foundation Medicine, Tempus, Caris, Guardant), aligned with the HL7 FHIR Genomics IG. A standards-aligned target representation for biomedical information-extraction…
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SSILD Trainer github.com
A SSILD (Senses Initiated Lucid Dream) training web app designed to help you practice the SSILD cycles.
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fmri_processing_scripts github.com
Legacy pipeline for maximal preprocessing.
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oro.nifti github.com
Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.
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