VIB text mining and curation training bits.vib.be

This training workshop happenened in 2013 but the slides are still online.

SPL-ADR-200db bionlp.nlm.nih.gov

paper - A pilot dataset containing standardised information, and annotations of occurence in text, about ~5,000 known adverse reactions for 200 FDA-approved drugs.

Biolink biolink.github.io

code - A data model of biological entities. Provided as a YAML file.

BioCreative VI CHEMPROT Corpus biocreative.bioinformatics.udel.edu

paper - >2,400 articles annotated with chemical-protein interactions of a variety of relation types. Requires registration.

BioCreAtIvE V CDR Task Corpus (BC5CDR) biocreative.bioinformatics.udel.edu

paper - 1,500 articles (title and abstract) published in 2014 or later, annotated for 4,409 chemicals, 5,818 diseases and 3116 chemical–disease interactions. Requires registration.

BioCreAtIvE workshop biocreative.bioinformatics.udel.edu

These workshops have been organized since 2004, with BioCreative VI happening February 2017 and the BioCreative/OHNLP Challenge held in 2018. See Datasets below.

BioC-BioGRID bioc.sourceforge.net

paper - 120 full text articles annotated for PPI and genetic interactions. Used in the BioCreative V BioC task.

BioASQword2vec bioasq.org

paper - Qord embeddings derived from biomedical text (>10 million PubMed abstracts) using the popular word2vec tool.

BioASQ bioasq.org

Challenges on biomedical semantic indexing and question answering. Challenges and workshops held annually since 2013.

Mining Electronic Health Records (EHRs): A Survey arxiv.org

A review of the methods and philosophy behind mining electronic health records, including using them for adverse event detection. See Table 2 for a list of relevant papers as of mid-2017.

AMIA amia.org

Many—but certainly not all—individuals studying biomedical informatics are members of the American Medical Informatics Association. AMIA publishes a journal, JAMIA (see below).

SemEval workshop alt.qcri.org

Tasks and evaluations in computational semantic analysis. Tasks vary by year but frequently cover scientific and/or biomedical language, e.g. the SemEval-2019 Task 12 on Toponym Resolution in Scientific Papers.

Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine ahajournals.org

An overview of how BioIE and bioinformatics workflows can be applied to questions in cardiovascular health and medicine research.

ACM-BCB acm-bcb.org

The ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Held annually since 2010.

NAR academic.oup.com

Nucleic Acids Research. Has a broad biomolecular focus but is particularly notable for its annual database issue.

JAMIA academic.oup.com

The Journal of the American Medical Informatics Association. Concerns "articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy".

Database academic.oup.com

Its subtitle is "The Journal of Biological Databases and Curation". Open access.

BioNLP ST 2013 datasets 2013.bionlp-st.org

data from six shared tasks, though some may not be easily accessible; try the CG task set (BioNLP2013CG) for extensive entity and event annotations.

How the Great Firewall of China is blocked in China usenix.org

Paper explaining how Tor is banned in China along with ways to circumvent it.

Analyzing China's Blocking of Unpublished Tor Bridges usenix.org

Study on how China blocks unlisted Tor bridges and how to prevent this.

txtorcon txtorcon.readthedocs.io

An implementation of the control-spec for Tor using the Twisted networking library for Python.

Download torproject.org

About torproject.org

Russia Passes Bill Banning Tor themoscowtimes.com

Article about Russia banning VPNs and Tor.

Snowden Revelations theguardian.com

The Snowden Revelations explained.

Updating tb-manual.torproject.org

How to update Tor Browser.

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How to remove Tor Browser from your system.

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Configuring Tor Browser for security and usability.

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Learn how to protect your data using Tor Browser and HTTPS.

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Learn how to use Tor Browser for the first time.

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How Tor Browser handles add-ons, plugins, and JavaScript.

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Learn about Tor for mobile devices.

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Learn how to control personally identifying information in Tor Browser.

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How to install Tor Browser onto removable media.

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Issues with Tor.

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Most Pluggable Transports, such as obfs4, rely on the use of "bridge" relays.

Anti-fingerprinting tb-manual.torproject.org

How Tor Browser mitigates browser fingerprinting.

About Tor Browser tb-manual.torproject.org

Learn what Tor Browser can do to protect your privacy and anonymity.

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