BioNLP ST 2013 datasets
data from six shared tasks, though some may not be easily accessible; try the CG task set (BioNLP2013CG) for extensive entity and event annotations.
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- Biomedical Information Extraction
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- 2026-10-10
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DEEPNLP github.com
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BioCreAtIvE workshop biocreative.bioinformatics.udel.edu
These workshops have been organized since 2004, with BioCreative VI happening February 2017 and the BioCreative/OHNLP Challenge held in 2018. See Datasets below.
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nlp-datasets github.com
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BioC-BioGRID bioc.sourceforge.net
paper - 120 full text articles annotated for PPI and genetic interactions. Used in the BioCreative V BioC task.
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BioGPT github.com
paper - A GPT-2 model pre-trained on 15 million PubMed abstracts, along with fine-tuned versions for several biomedical tasks.
Biomedical Information Extraction › Datasets > Annotated Text Data: “data from six shared tasks, though some may not be easily accessible; try the CG task set (BioNLP2013CG) for extensive entity and event annotations.”