BioCreative VI CHEMPROT Corpus
paper - >2,400 articles annotated with chemical-protein interactions of a variety of relation types. Requires registration.
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BioCreAtIvE V CDR Task Corpus (BC5CDR) biocreative.bioinformatics.udel.edu
paper - 1,500 articles (title and abstract) published in 2014 or later, annotated for 4,409 chemicals, 5,818 diseases and 3116 chemical–disease interactions. Requires registration.
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BioC-BioGRID bioc.sourceforge.net
paper - 120 full text articles annotated for PPI and genetic interactions. Used in the BioCreative V BioC task.
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BioCreAtIvE 1 sourceforge.net
paper - 15,000 sentences (10,000 training and 5,000 test) annotated for protein and gene names. 1,000 full text biomedical research articles annotated with protein names and Gene Ontology terms.
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BioInfer corpora.informatik.hu-berlin.de
paper - 1,100 sentences from biomedical research abstracts annotated for relationships (including PPI), named entities, and syntactic dependencies. Additional information and download links are here.
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NCBI Disease Corpus ncbi.nlm.nih.gov
paper - A corpus of 793 biomedical abstracts annotated with names of diseases and related concepts from MeSH and OMIM.
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BioCreAtIvE workshop biocreative.bioinformatics.udel.edu
These workshops have been organized since 2004, with BioCreative VI happening February 2017 and the BioCreative/OHNLP Challenge held in 2018. See Datasets below.
Biomedical Information Extraction › Datasets > Annotated Text Data: “paper - >2,400 articles annotated with chemical-protein interactions of a variety of relation types. Requires registration.”