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Monarch Initiative

monarchinitiative.orgsite

A joint effort between groups at Oregon State University, Oregon Health & Science University, Lawrence Berkeley National Lab, The Jackson Laboratory, and several others, seeking to "integrate biological information using semantics, and present it in a novel way, leveraging…

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Biomedical Information Extraction
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2026-10-10
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  1. Project Monarch Health monarchparasites.org

  2. Mayo Clinic's clinical natural language processing program mayo.edu

    Several groups at Mayo Clinic have made major contributions to BioIE (for example, the Apache cTAKES platform) over the past 20 years.

  3. MoNA MassBank of North America mona.fiehnlab.ucdavis.edu

    Meta-database of metabolite mass spectra, metadata, and associated compounds.

  4. Structured information extraction from scientific text with large language models nature.com

    Nature Communications, 2024. [All Versions]. This paper presents a simple approach to joint named entity recognition and relation extraction and demonstrate how pretrained large language models can be fine-tuned to extract useful records of complex scientific knowledge. The…

  5. COMBINE combine.org.au

    site link ↗
  6. Monarch ORM github.com

    tool link ↗

Biomedical Information Extraction › Groups Active in the Field: “A joint effort between groups at Oregon State University, Oregon Health & Science University, Lawrence Berkeley National Lab, The Jackson Laboratory, and several others, seeking to "integrate biological information using semantics, and present it in a novel way, leveraging…”