Biological Visualizations
72 items from keller-mark/awesome-biological-visualizations ★249
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Broad Institute Single Cell Portal singlecell.broadinstitute.org
Reducing barriers and accelerating single-cell research.
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UCSC Genome Browser genome.ucsc.edu
Interactively visualize genomic data.
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Ensembl ensembl.org
A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.
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EBI Single Cell Expression Atlas ebi.ac.uk
Single cell gene expression across species.
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cBioPortal for Cancer Genomics cbioportal.org
Visualization, analysis and download of large-scale cancer genomics data sets.
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UCSC Xena xenabrowser.net
Explore functional genomic data sets for correlations between genomic and/or phenotypic variables.
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LiteMol webchemdev.ncbr.muni.cz
Visualization of large-scale macromolecular structure data.
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Vitessce vitessce.io
Visual integration tool for exploration of spatial single-cell experiment data.
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TissUUmaps tissuumaps.research.it.uu.se
Interactive visualization of large-scale spatial gene expression and tissue morphology data.
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TISCH tisch.comp-genomics.org
Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor microenvironment.
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Giotto Viewer spatialgiotto.rc.fas.harvard.edu
A web-based visualization package for spatial transcriptomic data.
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MORPHEUS software.broadinstitute.org
Versatile matrix visualization and analysis software.
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Single Cell VR singlecellvr.herokuapp.com
Interactive visualization of single-cell data in virtual reality.
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Signal signal.mutationalsignatures.com
Mutational signatures extracted from cancer samples and isogenic cell-based experiments.
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SieveSifter sieve.fredhutch.org
Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.
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TADkit sgt.cnag.cat
3D genome browser and TADbit front-end.
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SCope scope.aertslab.org
A visualization tool for large-scale scRNA-seq datasets.
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EzMol sbg.bio.ic.ac.uk
Visualisation and image production of protein and nucleic acid structures.
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Malaria Cell Atlas sanger.ac.uk
Explore how genes are expressed across more than 500 individual Plasmodium parasites.
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Life Expectancy projects.flowingdata.com
Life expectancies around the world, 1960 to 2009.
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Archaeopteryx phyloxml.org
Visualization, analysis, and editing of phylogenetic trees.
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PhyD3 phyd3.bits.vib.be
A phylogenetic tree viewer.
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pdb2print pdb2print.org
Convert a PDB structure into a 3D-printable 3MF file, with one object per chain, magnet pockets and custom display stands.
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Oncoscape oncoscape.sttrcancer.org
An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data.
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Nextstrain nextstrain.org
Real-time tracking of virus evolution.
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Mouse Brain Atlas mousebrain.org
Atlas of cell types from the Linnarsson Lab.
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Metaviz metaviz.cbcb.umd.edu
Interactive statistical and visual analysis of metagenomic data.
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Metaspace metaspace2020.eu
A platform for metabolite annotation of imaging mass spectrometry data.
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GIVe mcf7.givengine.org
Epigenome and genome interaction.
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iSEE marionilab.cruk.cam.ac.uk
The Interactive SummarizedExperiment Explorer.
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