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Biological Visualizations

72 items from keller-mark/awesome-biological-visualizations ★249

all kinds
  1. 0
    Peax github.com
    tool category #biological-visualizations link ↗

    Interactive visual pattern exploration in epigenomic data using unsupervised deep representation learning.

  2. 0
    Broad Institute Single Cell Portal singlecell.broadinstitute.org
    site category #biological-visualizations link ↗

    Reducing barriers and accelerating single-cell research.

  3. 0
    UCSC Genome Browser genome.ucsc.edu
    site category #biological-visualizations link ↗

    Interactively visualize genomic data.

  4. 0
    Ensembl ensembl.org
    site category #biological-visualizations link ↗

    A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.

  5. 0
    EBI Single Cell Expression Atlas ebi.ac.uk
    site category #biological-visualizations link ↗

    Single cell gene expression across species.

  6. 0
    cBioPortal for Cancer Genomics cbioportal.org
    site category #biological-visualizations link ↗

    Visualization, analysis and download of large-scale cancer genomics data sets.

  7. 0
    UCSC Xena xenabrowser.net
    site category #biological-visualizations link ↗

    Explore functional genomic data sets for correlations between genomic and/or phenotypic variables.

  8. 0
    LiteMol webchemdev.ncbr.muni.cz
    site category #biological-visualizations link ↗

    Visualization of large-scale macromolecular structure data.

  9. 0
    Vitessce vitessce.io
    site category #biological-visualizations link ↗

    Visual integration tool for exploration of spatial single-cell experiment data.

  10. 0
    TissUUmaps tissuumaps.research.it.uu.se
    site category #biological-visualizations link ↗

    Interactive visualization of large-scale spatial gene expression and tissue morphology data.

  11. 0
    TISCH tisch.comp-genomics.org
    site category #biological-visualizations link ↗

    Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor microenvironment.

  12. 0
    Giotto Viewer spatialgiotto.rc.fas.harvard.edu
    site category #biological-visualizations link ↗

    A web-based visualization package for spatial transcriptomic data.

  13. 0
    MORPHEUS software.broadinstitute.org
    site category #biological-visualizations link ↗

    Versatile matrix visualization and analysis software.

  14. 0
    Single Cell VR singlecellvr.herokuapp.com
    site category #biological-visualizations link ↗

    Interactive visualization of single-cell data in virtual reality.

  15. 0
    Signal signal.mutationalsignatures.com
    site category #biological-visualizations link ↗

    Mutational signatures extracted from cancer samples and isogenic cell-based experiments.

  16. 0
    SieveSifter sieve.fredhutch.org
    site category #biological-visualizations link ↗

    Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.

  17. 0
    TADkit sgt.cnag.cat
    site category #biological-visualizations link ↗

    3D genome browser and TADbit front-end.

  18. 0
    SCope scope.aertslab.org
    site category #biological-visualizations link ↗

    A visualization tool for large-scale scRNA-seq datasets.

  19. 0
    EzMol sbg.bio.ic.ac.uk
    site category #biological-visualizations link ↗

    Visualisation and image production of protein and nucleic acid structures.

  20. 0
    Malaria Cell Atlas sanger.ac.uk
    site category #biological-visualizations link ↗

    Explore how genes are expressed across more than 500 individual Plasmodium parasites.

  21. 0
    Life Expectancy projects.flowingdata.com
    site category #biological-visualizations link ↗

    Life expectancies around the world, 1960 to 2009.

  22. 0
    Archaeopteryx phyloxml.org
    site category #biological-visualizations link ↗

    Visualization, analysis, and editing of phylogenetic trees.

  23. 0
    PhyD3 phyd3.bits.vib.be
    site category #biological-visualizations link ↗

    A phylogenetic tree viewer.

  24. 0
    pdb2print pdb2print.org
    site category #biological-visualizations link ↗

    Convert a PDB structure into a 3D-printable 3MF file, with one object per chain, magnet pockets and custom display stands.

  25. 0
    Oncoscape oncoscape.sttrcancer.org
    site category #biological-visualizations link ↗

    An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data.

  26. 0
    Nextstrain nextstrain.org
    site category #biological-visualizations link ↗

    Real-time tracking of virus evolution.

  27. 0
    Mouse Brain Atlas mousebrain.org
    site category #biological-visualizations link ↗

    Atlas of cell types from the Linnarsson Lab.

  28. 0
    Metaviz metaviz.cbcb.umd.edu
    site category #biological-visualizations link ↗

    Interactive statistical and visual analysis of metagenomic data.

  29. 0
    Metaspace metaspace2020.eu
    site category #biological-visualizations link ↗

    A platform for metabolite annotation of imaging mass spectrometry data.

  30. 0
    GIVe mcf7.givengine.org
    site category #biological-visualizations link ↗

    Epigenome and genome interaction.

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