Biological Visualizations
72 items from keller-mark/awesome-biological-visualizations ★249
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MAGI magi.brown.edu
Visualization and collaborative annotation of genomic aberrations.
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Clustergrammer CCLE Explorer maayanlab.github.io
Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by tissue of origin using Clustergrammer.
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Clustergrammer maayanlab.cloud
Visualize high-dimensional data as interactive hierarchically clustered heatmaps.
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Loom Viewer loom.linnarssonlab.org
Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format.
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SPRING kleintools.hms.harvard.edu
A tool for uncovering high-dimensional structure in single-cell gene expression data.
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cellxgene kidneycellatlas.org
An interactive explorer for single-cell transcriptomics data.
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START kcvi.shinyapps.io
Shiny Transcriptome Analysis Resource Tool allows users to visualize RNA-seq data starting with count data.
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Brain mRNA Isoform Atlas isoformatlas.com
Visualize cell type signatures of alternative splicing in postnatal development.
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IONpath MIBItracker ionpath.com
Slide and image data.
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Snake Oil Supplements informationisbeautiful.net
Scientific evidence for popular health supplements.
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IMP: Integrative Multi-species Prediction imp.princeton.edu
Analyze your experimental results in the functional context of gene-gene networks from multiple organisms.
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HiPiler hipiler.higlass.io
A tool for visually exploring and aggregating reoccurring patterns (like loops, TADs, etc.) in Hi-C maps.
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HiGlass higlass.io
A tool for exploring genomic contact matrices and tracks.
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neuroglancer hemibrain-dot-neuroglancer-demo.appspot.com
Tool for visualization of highly detailed maps of neuronal connectivity in the fly brain.
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Institute for Health Metrics and Evaluation healthdata.org
Visualizations of disease worldwide.
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Gosling gosling.js.org
A grammar-based toolkit for scalable and interactive genomics data visualization.
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GeneMANIA genemania.org
Helps predict the function of genes and gene sets.
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Genomics 2 Proteins portal g2p.broadinstitute.org
A platform for connecting genomic data to protein sequence and protein structure.
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FlyWire flywire.ai
A human-AI collaboration to map the fly connectome.
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gbatlas fishka.bio
Interactive viewer for GenBank/GenPept records: linear and circular feature maps, CDS translation, ORF and restriction-site layers, entirely in the browser.
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iCoMut Beta for FireBrowse firebrowse.org
Interactive exploration of mutation rates, mutation signatures, clinical data, gene mutations.
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ExploSig explosig.lrgr.io
Interactive visualization of mutational signatures and clinical data.
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Epiviz epiviz.cbcb.umd.edu
Interactive visual analytics for functional genomics data.
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WashU Epigenome Browser epigenomegateway.wustl.edu
Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the context of their metadata.
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Race, Gender, and Age in TCGA enpicom.com
An interactive visualization of patient gender, race, and age in The Cancer Genome Atlas (TCGA) dataset.
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Mutaframe deogen2.mutaframe.com
Visualize variants of the human genome.
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Delta delta.big.ac.cn
An integrative analysis and visualization platform for 3D genome.
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Cytosplore cytosplore.org
Cytosplore is an interactive visual analysis system for the analysis of mass cytometry data.
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Lifespans cotrino.com
Visualization of the lifespans of multiple species.
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Allen Mouse Brain Connectivity Atlas connectivity.brain-map.org
A high-resolution map of neural connections in the mouse brain.
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Coessentiality coessentiality.net
A genome-wide almanac of co-essential modules assigns function to uncharacterized genes.
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Allen Brain Map - Transcriptomics Explorer celltypes.brain-map.org
Atlas of human and mouse transcriptomic cell types.
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UCSC Cell Browser cells.ucsc.edu
An interactive viewer for single-cell expression.
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PLACNETw castillo.dicom.unican.es
A graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets.
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COSMIC-3D cancer.sanger.ac.uk
A platform for understanding cancer mutations in the context of 3D protein structure.
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COSMIC Cancer Browser cancer.sanger.ac.uk
Browse COSMIC data by tissue type and histology.
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Avivator avivator.gehlenborglab.org
A lightweight "batteries-included" WebGL viewer for remote imaging data in Bio-Formats Zarr or OME-TIFF format.
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ASAP asap.epfl.ch
A collaborative portal to analyze single-cell transcriptomics data.
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L1000FWD amp.pharm.mssm.edu
Large-scale visualization of drug-induced transcriptomic signatures.
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AlzMap alzmap.org
Spatial transcriptomics in Alzheimer's disease.
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Juicebox aidenlab.org
Visualization for Hi-C data.
