Programming
Software development: programming languages, coding, libraries and frameworks, software engineering and architecture, source control, developer tools, databases, and infrastructure.
-
16x Prompt prompt.16x.engineer
Cross-platform app to add source code and formatting instructions into prompt for coding tasks. ($)
-
Price Per Token pricepertoken.com
Compare LLM API pricing across providers. Includes token counter and cost calculator.
-
Developer Duck apps.apple.com
Native developer-focused macOS app with Xcode plugin and command line support. ($)
-
The Haskell Tool Stack docs.haskellstack.org
-
ZINC ligand discovery database zinc.docking.org
Free database of commercially-available compounds for virtual screening.
-
WikiPathways wikipathways.org
Database of biological pathways.
-
UniRef uniprot.org
Non-redundant sequence database clustering UniProtKB entries at multiple sequence identity thresholds.
-
UniProt REST API uniprot.org
Programmatic access to protein sequence and functional annotation data.
-
Uniclust uniclust.mmseqs.com
Clustered protein sequence databases.
-
Squidpy squidpy.readthedocs.io
Python library for spatial single-cell analysis.
-
Cancer Cell Line Encyclopedia sites.broadinstitute.org
Database of ~1000 cancer cell lines.
-
SIGNOR 2.0 signor.uniroma2.it
Database of causal signaling interactions and pathways, with signed and directed relationships between proteins.
-
SIDER (Side Effect Resource) sideeffects.embl.de
Database of 1,430 approved drugs with their recorded adverse drug reactions across 27 system-organ classes.
-
SeqBench seqbench.com
Web-based molecular biology sequence workbench for primer design, cloning simulation (Gibson, Golden Gate, restriction digest), CRISPR guide RNA design, and sequence analysis, with a public REST API, OpenAPI 3.1 spec, and MCP server.
-
Scanpy scanpy.readthedocs.io
Python library for scRNA-seq analysis.
-
Rhea rhea-db.org
Database of chemical reactions.
-
Rfam rfam.org
Database of RNA families with sequence alignments and consensus structures.
-
Ensembl REST API rest.ensembl.org
API for genomic annotations, variants, genes, and comparative genomics.
-
RegNetwork regnetworkweb.org
Database of gene regulatory networks covering transcription factor–target gene and miRNA–gene interaction data across multiple species.
-
Reactome reactome.org
Expert-curated, peer-reviewed pathway database with detailed reaction mechanisms.
-
PubChem pubchem.ncbi.nlm.nih.gov
One of the largest chemical databases (compounds, genes, and proteins).
-
THE HUMAN PROTEIN ATLAS proteinatlas.org
Comprehensive human protein database (cells, tissues, organs).
-
Open Targets Platform API platform.opentargets.org
API for target–disease associations integrating genetics, genomics, and drug data.
-
PK-DB pk-db.com
Open database of experimental pharmacokinetics (PK) and ADME data from clinical and preclinical studies.
-
PathwayCommons pathwaycommons.org
Database of pathways and interactions.
-
SAbDab opig.stats.ox.ac.uk
Structural Antibody Database containing all antibody structures in the PDB.
-
OADB (Observed Antibody Space Database) opig.stats.ox.ac.uk
Database of antibody sequences from immune repertoire sequencing.
-
OmniPath omnipathdb.org
Comprehensive resource integrating protein interactions, signaling pathways, gene regulatory networks, and miRNA targets from over 100 databases.
-
OMIM (Online Mendelian Inheritance in Man) omim.org
Comprehensive database of human genes and genetic disorders.
-
PubMed E-utilities (esearch/efetch) nlm.nih.gov
APIs for searching and retrieving biomedical literature from PubMed.
-
Human Genome Resources at NCBI ncbi.nlm.nih.gov
Database for genomics, proteomics, transcriptomics, and systems biology.
-
Gene Expression Omnibus ncbi.nlm.nih.gov
Public functional genomics database.
-
NCBI E-utilities ncbi.nlm.nih.gov
Unified APIs for accessing NCBI databases (Gene, GEO, SRA, PubChem, etc).
-
MoNA MassBank of North America mona.fiehnlab.ucdavis.edu
Meta-database of metabolite mass spectra, metadata, and associated compounds.
-
MIMIC-IV mimic.mit.edu
Freely accessible critical care database.
-
MDAnalysis mdanalysis.org
Python library for analyzing and altering molecular dynamics simulation trajectories.
-
MassBank massbank.jp
Open source databases and tools for mass spectrometry reference spectra.
-
LIPID MAPS lipidmaps.org
Database of lipids.
-
KEGG REST API kegg.jp
API for accessing KEGG pathways, compounds, genes, and reactions.
-
JASPAR jaspar.genereg.net
Database of transcription factor binding profiles.
-
Therapeutic Target Database idrblab.net
Drug-target, target-disease, and drug-disease datasets.
-
HMDB (Human Metabolome Database) hmdb.ca
Comprehensive database of small molecule metabolites found in the human body.
-
MSigDB (Molecular Signatures Database) gsea-msigdb.org
Curated gene sets derived from pathways and biological processes.
-
TRRUST v2 grnpedia.org
Manually curated database of human and mouse transcriptional regulatory interactions between transcription factors and their target genes, expanded with literature-derived evidence.
-
DrugBank go.drugbank.com
Database of drugs and targets (University of Alberta).
-
gnomAD gnomad.broadinstitute.org
Genome Aggregation Database; genetic variation from large-scale sequencing projects.
-
Drug Mechanism Database (DrugMechDB) github.com
Mechanisms of action from drug to disease.
-
EU Drug Regulating Authorities Clinical Trials DB (EudraCT) eudract.ema.europa.eu
European clinical trial database.
-
Pfam ebi.ac.uk
Database of protein families described by multiple sequence alignments and hidden Markov models.
-
InterPro ebi.ac.uk
Protein families, domains, and functional sites database integrating 14 member databases including Pfam and PROSITE.
- next page of items loading…
