Squidpy
Python library for spatial single-cell analysis.
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- Computational Biology
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- 2026-10-10
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Squidpy github.com
Python framework that brings together tools from omics and image analysis to enable scalable description of spatial molecular data, such as transcriptome or multivariate proteins.
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DeepSpot2Cell github.com
Predicts virtual single-cell spatial transcriptomics from H&E using spot-level supervision (NeurIPS 2025 Imageomics).
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Computational Biology › Preprocessing Tools: “Python library for spatial single-cell analysis.”