DypFISH

github.comtool

Python library for spatial analysis of smFISH images.

from

Biological Image Analysis

added

2026-10-10

likes

0

similar

1. ▲
   Big-fish github.com

   tool category #biological-image-analysis link ↗

   Python package for the analysis of smFISH images.

   
2. ▲
   Squidpy github.com

   tool category #biological-image-analysis link ↗

   Python framework that brings together tools from omics and image analysis to enable scalable description of spatial molecular data, such as transcriptome or multivariate proteins.

   
3. ▲
   DIPY github.com

   tool category #neuroscience link ↗
4. ▲
   RS-FISH github.com

   tool category #biological-image-analysis link ↗

   Fiji plugin to detect FISH spots in 2D/3D images which scales to very large images.

   
5. ▲
   QuimP github.com

   tool category #biological-image-analysis link ↗

   Software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.

   
6. ▲
   Squidpy squidpy.readthedocs.io

   site category #computational-biology link ↗

   Python library for spatial single-cell analysis.

Biological Image Analysis › Fluoresence in situ hybridization: “Python library for spatial analysis of smFISH images.”