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Genome foundation model trained on 9 trillion DNA base pairs across all domains of life with a 1M-token context window and single-nucleotide resolution.

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Computational Biology
added
2026-10-10
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similar

  1. Evo github.com

    Long-context genomic foundation model (up to 1M tokens).

  2. DNABERT-2 github.com

    Improved genome foundation model with efficient tokenization.

  3. AlphaGenome github.com

    Long-context DNA model predicting multimodal regulatory outputs including expression, splicing, chromatin features, and contact maps at near base-pair resolution.

  4. GeneCompass github.com

    Large-scale foundation model integrating DNA regulatory sequences and single-cell transcriptomics from 120M+ cells across multiple species for gene regulation prediction.

  5. Sei github.com

    Sequence-to-function framework learning a genome-wide regulatory activity code from DNA sequences for variant effect prediction.

  6. modernGENA github.com

    ModernBERT-style DNA foundation-model family pretrained on hundreds of vertebrate genome assemblies for efficient long-sequence regulatory modeling.

Computational Biology › Machine Learning Tasks and Models > Foundation Models > Genomics Foundation Models: “Genome foundation model trained on 9 trillion DNA base pairs across all domains of life with a 1M-token context window and single-nucleotide resolution.”