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Miscellaneous

17,439 items in 132 lists

  1. Single Cell VR singlecellvr.herokuapp.com

    Interactive visualization of single-cell data in virtual reality.

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  2. Signal signal.mutationalsignatures.com

    Mutational signatures extracted from cancer samples and isogenic cell-based experiments.

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  3. SieveSifter sieve.fredhutch.org

    Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.

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  4. TADkit sgt.cnag.cat

    3D genome browser and TADbit front-end.

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  5. SCope scope.aertslab.org

    A visualization tool for large-scale scRNA-seq datasets.

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  6. EzMol sbg.bio.ic.ac.uk

    Visualisation and image production of protein and nucleic acid structures.

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  7. Malaria Cell Atlas sanger.ac.uk

    Explore how genes are expressed across more than 500 individual Plasmodium parasites.

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  8. Life Expectancy projects.flowingdata.com

    Life expectancies around the world, 1960 to 2009.

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  9. Archaeopteryx phyloxml.org

    Visualization, analysis, and editing of phylogenetic trees.

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  10. PhyD3 phyd3.bits.vib.be

    A phylogenetic tree viewer.

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  11. pdb2print pdb2print.org

    Convert a PDB structure into a 3D-printable 3MF file, with one object per chain, magnet pockets and custom display stands.

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  12. Oncoscape oncoscape.sttrcancer.org

    An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data.

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  13. Nextstrain nextstrain.org

    Real-time tracking of virus evolution.

  14. Mouse Brain Atlas mousebrain.org

    Atlas of cell types from the Linnarsson Lab.

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  15. Metaviz metaviz.cbcb.umd.edu

    Interactive statistical and visual analysis of metagenomic data.

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  16. Metaspace metaspace2020.eu

    A platform for metabolite annotation of imaging mass spectrometry data.

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  17. GIVe mcf7.givengine.org

    Epigenome and genome interaction.

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  18. iSEE marionilab.cruk.cam.ac.uk

    The Interactive SummarizedExperiment Explorer.

  19. MAGI magi.brown.edu

    Visualization and collaborative annotation of genomic aberrations.

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  20. Clustergrammer CCLE Explorer maayanlab.github.io

    Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by tissue of origin using Clustergrammer.

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  21. Clustergrammer maayanlab.cloud

    Visualize high-dimensional data as interactive hierarchically clustered heatmaps.

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  22. Loom Viewer loom.linnarssonlab.org

    Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format.

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  23. SPRING kleintools.hms.harvard.edu

    A tool for uncovering high-dimensional structure in single-cell gene expression data.

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  24. cellxgene kidneycellatlas.org

    An interactive explorer for single-cell transcriptomics data.

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  25. START kcvi.shinyapps.io

    Shiny Transcriptome Analysis Resource Tool allows users to visualize RNA-seq data starting with count data.

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  26. Brain mRNA Isoform Atlas isoformatlas.com

    Visualize cell type signatures of alternative splicing in postnatal development.

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  27. IONpath MIBItracker ionpath.com

    Slide and image data.

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  28. Snake Oil Supplements informationisbeautiful.net

    Scientific evidence for popular health supplements.

  29. IMP: Integrative Multi-species Prediction imp.princeton.edu

    Analyze your experimental results in the functional context of gene-gene networks from multiple organisms.

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  30. HiPiler hipiler.higlass.io

    A tool for visually exploring and aggregating reoccurring patterns (like loops, TADs, etc.) in Hi-C maps.

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  31. HiGlass higlass.io

    A tool for exploring genomic contact matrices and tracks.

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  32. neuroglancer hemibrain-dot-neuroglancer-demo.appspot.com

    Tool for visualization of highly detailed maps of neuronal connectivity in the fly brain.

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  33. Institute for Health Metrics and Evaluation healthdata.org

    Visualizations of disease worldwide.

  34. Gosling gosling.js.org

    A grammar-based toolkit for scalable and interactive genomics data visualization.

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  35. GeneMANIA genemania.org

    Helps predict the function of genes and gene sets.

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  36. Genomics 2 Proteins portal g2p.broadinstitute.org

    A platform for connecting genomic data to protein sequence and protein structure.

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  37. FlyWire flywire.ai

    A human-AI collaboration to map the fly connectome.

  38. gbatlas fishka.bio

    Interactive viewer for GenBank/GenPept records: linear and circular feature maps, CDS translation, ORF and restriction-site layers, entirely in the browser.

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  39. iCoMut Beta for FireBrowse firebrowse.org

    Interactive exploration of mutation rates, mutation signatures, clinical data, gene mutations.

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  40. ExploSig explosig.lrgr.io

    Interactive visualization of mutational signatures and clinical data.

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  41. Epiviz epiviz.cbcb.umd.edu

    Interactive visual analytics for functional genomics data.

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  42. WashU Epigenome Browser epigenomegateway.wustl.edu

    Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the context of their metadata.

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  43. Race, Gender, and Age in TCGA enpicom.com

    An interactive visualization of patient gender, race, and age in The Cancer Genome Atlas (TCGA) dataset.

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  44. Mutaframe deogen2.mutaframe.com

    Visualize variants of the human genome.

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  45. Delta delta.big.ac.cn

    An integrative analysis and visualization platform for 3D genome.

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  46. Cytosplore cytosplore.org

    Cytosplore is an interactive visual analysis system for the analysis of mass cytometry data.

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  47. Lifespans cotrino.com

    Visualization of the lifespans of multiple species.

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  48. Allen Mouse Brain Connectivity Atlas connectivity.brain-map.org

    A high-resolution map of neural connections in the mouse brain.

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  49. Coessentiality coessentiality.net

    A genome-wide almanac of co-essential modules assigns function to uncharacterized genes.

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  50. Allen Brain Map - Transcriptomics Explorer celltypes.brain-map.org

    Atlas of human and mouse transcriptomic cell types.

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