Protein LM
Implements BERT and autoregressive models for proteins, as described in Biological Structure and Function Emerge from Scaling Unsupervised Learning to 250 Million Protein Sequences and ProGen: Language Modeling for Protein Generation.
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- 2026-10-10
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ProGen2 github.com
Protein language model trained on diverse protein families for sequence generation and fitness prediction.
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Multimodal protein language model that jointly reasons over sequence, structure, and function for generative protein design and engineering.
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Suite of protein language models (ProtBERT, ProtT5, ProtXLNet) trained on billions of protein sequences from UniRef and BFD.
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Structure-aware protein language model using structure-aware tokens that encode both sequence and backbone geometry for improved function prediction.
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DrBioRight 2.0: an LLM-powered bioinformatics chatbot for large-scale cancer functional proteomics analysis nature.com
Nature Communications, 2025. [All Versions]. [Project]. Functional proteomics provides critical insights into cancer mechanisms, facilitating the discovery of novel biomarkers and therapeutic targets. The authors have developed a comprehensive cancer functional proteomics…
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