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Segment Anything in Light and Electron Microscopy via Membrane Guidance.

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Biological Image Analysis

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2026-10-10

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1. ▲
   MicroSAM github.com

   tool category #biological-image-analysis link ↗

   Tools for segmentation and tracking in microscopy build on top of SegmentAnything. Segment and track objects in microscopy images interactively.

   
2. ▲
   SMAP github.com

   tool category #biological-image-analysis link ↗

   A modular super-resolution microscopy analysis platform for SMLM data.

   
3. ▲
   SyMBac github.com

   tool category #biological-image-analysis link ↗

   Accurate segmentation of bacterial microscope images using synthetically generated image data.

   
4. ▲
   CellSAM github.com

   tool category #biological-image-analysis link ↗

   A foundation model for cell segmentation trained on a diverse range of cells and data types.

5. ▲
   mesoSPIM mesospim.org

   site category #open-hardware link ↗

   Light-sheet microscopes for imaging in cleared tissue.

   
6. ▲
   RSEM github.com

   tool category #bioinformatics link ↗
   

Biological Image Analysis › Image processing and segmentation: “Segment Anything in Light and Electron Microscopy via Membrane Guidance.”