SATURN
Transformer-based model integrating gene expression and protein sequences via a protein language model to learn unified multi-species cell embeddings.
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- Computational Biology
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- 2026-10-10
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Nicheformer github.com
Foundation model for single-cell and spatial omics using a transformer architecture with positional embeddings to encode spatial cell information.
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VirTues github.com
Spatial-proteomics foundation model learning marker-aware representations across proteins, cells, niches, and tissues from multiplexed imaging.
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Computational Biology › Machine Learning Tasks and Models > Foundation Models > Single-cell Foundation Models: “Transformer-based model integrating gene expression and protein sequences via a protein language model to learn unified multi-species cell embeddings.”