dogear

enter for all results · esc to close

Basenji

github.comtool

Sequential regulatory activity prediction from DNA sequences.

from
Computational Biology
added
2026-10-10
likes
0

similar

  1. Sei github.com

    Sequence-to-function framework learning a genome-wide regulatory activity code from DNA sequences for variant effect prediction.

    tool link ↗
  2. modernGENA github.com

    ModernBERT-style DNA foundation-model family pretrained on hundreds of vertebrate genome assemblies for efficient long-sequence regulatory modeling.

    tool link ↗
  3. DNABERT github.com

    Pre-trained bidirectional encoder for DNA sequence analysis.

    tool link ↗
  4. HyenaDNA github.com

    Long-range genomic foundation model handling sequences up to 1M tokens with sub-quadratic attention.

    tool link ↗
  5. AlphaGenome github.com

    Long-context DNA model predicting multimodal regulatory outputs including expression, splicing, chromatin features, and contact maps at near base-pair resolution.

    tool link ↗
  6. Molecular Transformer github.com

    Sequence-to-sequence model for retrosynthesis prediction.

Computational Biology › Machine Learning Tasks and Models > Foundation Models > Genomics Foundation Models: “Sequential regulatory activity prediction from DNA sequences.”