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scFoundation

github.comtool

Large-scale foundation model for single-cell gene expression, enabling multiple downstream tasks.

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Computational Biology
added
2026-10-10
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similar

  1. GenePT github.com

    Foundation LLM for single-cell data.

  2. CellFM github.com

    800M-parameter single-cell foundation model pretrained on transcriptomics from 100 million human cells for annotation, integration, gene-function, and perturbation tasks.

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  3. CancerFoundation github.com

    Single-cell RNA-seq foundation model trained exclusively on a curated dataset of malignant cells to learn cancer-specific embeddings.

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  4. scGPT github.com

    Transformer-based foundation model pretrained on millions of single-cell profiles.

  5. BulkFormer github.com

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  6. HiCFoundation doi.org

    Hi-C foundation model pretrained on large-scale chromatin-contact maps for 3D-genome analysis, epigenomic prediction, and single-cell Hi-C adaptation.

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Computational Biology › Machine Learning Tasks and Models > Foundation Models > Single-cell Foundation Models: “Large-scale foundation model for single-cell gene expression, enabling multiple downstream tasks.”